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  • Vision
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Matter42 Atlas

  • Atlas Metrology
  • Atlas Physics AI

Resources

  • Security
  • FAQ
  • Documentation
  • Python SDK

Company

  • Team
  • Careers
  • Blog
Vision
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FAQ

Frequently asked questions

Answers for customers and platform users getting started with projects, uploads, analysis Blocks, literature workflows, and support.

Read the documentation
  • Getting started
  • Data and analysis
  • Reliability and interpretation
  • Projects, security, and support

Getting started

The basics for new customers and research teams evaluating Matter42.

What is Matter42 for?+
Matter42 helps materials teams organize projects, upload characterization data, run calibrated analysis workflows, compare literature, and use AI agents to move from raw measurements to interpretable results.
Who uses Matter42 Atlas?+
The platform is built for materials scientists, process engineers, device teams, and research groups working with thin films, 2D semiconductors, Raman, PL, XRD, microscopy-adjacent workflows, and defect analysis.
Do I need to write code to use Matter42?+
No. Core workflows run through the web app: upload files, inspect parsed data, run analysis Blocks, and review outputs. Python and custom Blocks are available when your team wants deeper automation or reusable internal workflows.
Where should I start after signing in?+
Create or open a project, upload your first characterization file, then review the generated maps, spectra, and parser summary before running heavier analysis Blocks.

Data and analysis

How uploads, parsers, and built-in scientific workflows behave.

What file types can I upload?+
Matter42 supports Raman and PL maps, single spectra, CSV/TSV tables, LabSpec text exports, TIFF hyperspectral stacks, calibrated AFM TIFF/CSV surface exports, XRD patterns, PDFs, markdown, plaintext, and images. When a format is custom, parser Blocks can be adapted for repeat use.
What happens after I upload a file?+
The platform detects the file type, parses it into a dataset, stores the result in your selected project, and prepares visual views such as spatial maps, spectra, tables, parser notes, or document records depending on the input.
Which analyses are available today?+
Atlas Metrology workflows include defect clustering, Raman-based defect density estimation, defect type classification, PL defect activity scoring, region segmentation, XRD, AFM, and XPS analysis, and literature search. Atlas Physics AI modeling (atomistic and process) is coming soon as plan add-ons; for a specific material or reactor today, contact us.
Can I analyze paired Raman and PL data from the same sample?+
Yes. Upload both files into the same project and run paired workflows such as defect clustering with PL as the primary dataset and Raman as auxiliary context.
Can I focus analysis on clean material only?+
Yes. Region segmentation can label interior, transition, and damaged areas so follow-up analysis can avoid boundary artifacts, PFIB halos, masks, or damaged regions when appropriate.

Reliability and interpretation

How to think about model outputs, calibration, and review steps.

Are the scientific results automatic or should I review them?+
Matter42 automates the tedious parts, but scientific judgment still matters. Review parser summaries, maps, masks, spectra, and any warnings before treating results as final.
How are defect density and classification results generated?+
The calibrated Atlas workflows compare measured spectral features with reference data and simulation-backed signatures. The app exposes the workflow output so your team can inspect the assumptions and supporting views.
What if the parser or analysis looks wrong?+
Keep the dataset, note the issue, and contact support from the app Resources menu. Parser fixes and custom parser Blocks are often the right answer for unusual instrument exports.

Projects, security, and support

Operational questions for teams using Matter42 in day-to-day work.

How should I organize work?+
Use projects for a research program, customer engagement, wafer run, or experiment series. Within a project, you can keep related files, characterizations, chats, and analysis outputs together.
Is my uploaded data public?+
No. Uploaded datasets are associated with your Matter42 account and selected project. If your organization has specific security, retention, or compliance requirements, contact the Matter42 team before uploading sensitive data.
Can Matter42 run without sending data outside our network?+
Yes. Matter42 can run in your own cloud account, on your own servers, or fully air-gapped on a single laptop or workstation with no network connection. The analysis tools are the same in every deployment, and we fit the setup to your network and security review. See Security and deployment.The air-gapped deployment is a separate product and is not part of the self-serve plans. Contact us to set it up.
Can I run Blocks built in the cloud on an offline machine?+
Yes. Build and refine a Block in Matter42 Cloud or on your private deployment, where the most capable AI assistant is available, then export it and run it on a fully air-gapped machine. The Block runs the same way offline, with no language model or network connection needed. See how Block export works.
Where can I find documentation?+
Start with the Matter42 documentation, which covers core concepts, app workflows, and the Python SDK.
How do I get help from the Matter42 team?+
Signed-in users can use Contact support from the app Resources menu. New customers can also reach out through the website contact form.

See materials intelligence on your data

Bring a Raman map, a PL scan, or a process question. We’ll show how Atlas analyzes it and how it fits your workflow.

Read the docs
Matter42

A world model for your materials: know what you made and decide what to make next, with the evidence attached.

Platform

  • Atlas Metrology
  • Atlas Physics AI
  • Literature

Software

  • Raman analysis
  • PL analysis
  • XPS analysis
  • XRD analysis
  • AFM analysis

Company

  • Vision
  • Team
  • Careers
  • Blog

Resources

  • Documentation
  • Python SDK
  • Security and deployment
  • FAQ

Legal

  • Privacy Policy
  • Terms and Conditions

Social

  • LinkedIn

Copyright © 2026 Matter42. All rights reserved.

Matter42
  • Vision
Sign in

Matter42 Atlas

  • Atlas Metrology
  • Atlas Physics AI

Resources

  • Security
  • FAQ
  • Documentation
  • Python SDK

Company

  • Team
  • Careers
  • Blog
Vision
Sign in
FAQ

Frequently asked questions

Answers for customers and platform users getting started with projects, uploads, analysis Blocks, literature workflows, and support.

Read the documentation
  • Getting started
  • Data and analysis
  • Reliability and interpretation
  • Projects, security, and support

Getting started

The basics for new customers and research teams evaluating Matter42.

What is Matter42 for?+
Matter42 helps materials teams organize projects, upload characterization data, run calibrated analysis workflows, compare literature, and use AI agents to move from raw measurements to interpretable results.
Who uses Matter42 Atlas?+
The platform is built for materials scientists, process engineers, device teams, and research groups working with thin films, 2D semiconductors, Raman, PL, XRD, microscopy-adjacent workflows, and defect analysis.
Do I need to write code to use Matter42?+
No. Core workflows run through the web app: upload files, inspect parsed data, run analysis Blocks, and review outputs. Python and custom Blocks are available when your team wants deeper automation or reusable internal workflows.
Where should I start after signing in?+
Create or open a project, upload your first characterization file, then review the generated maps, spectra, and parser summary before running heavier analysis Blocks.

Data and analysis

How uploads, parsers, and built-in scientific workflows behave.

What file types can I upload?+
Matter42 supports Raman and PL maps, single spectra, CSV/TSV tables, LabSpec text exports, TIFF hyperspectral stacks, calibrated AFM TIFF/CSV surface exports, XRD patterns, PDFs, markdown, plaintext, and images. When a format is custom, parser Blocks can be adapted for repeat use.
What happens after I upload a file?+
The platform detects the file type, parses it into a dataset, stores the result in your selected project, and prepares visual views such as spatial maps, spectra, tables, parser notes, or document records depending on the input.
Which analyses are available today?+
Atlas Metrology workflows include defect clustering, Raman-based defect density estimation, defect type classification, PL defect activity scoring, region segmentation, XRD, AFM, and XPS analysis, and literature search. Atlas Physics AI modeling (atomistic and process) is coming soon as plan add-ons; for a specific material or reactor today, contact us.
Can I analyze paired Raman and PL data from the same sample?+
Yes. Upload both files into the same project and run paired workflows such as defect clustering with PL as the primary dataset and Raman as auxiliary context.
Can I focus analysis on clean material only?+
Yes. Region segmentation can label interior, transition, and damaged areas so follow-up analysis can avoid boundary artifacts, PFIB halos, masks, or damaged regions when appropriate.

Reliability and interpretation

How to think about model outputs, calibration, and review steps.

Are the scientific results automatic or should I review them?+
Matter42 automates the tedious parts, but scientific judgment still matters. Review parser summaries, maps, masks, spectra, and any warnings before treating results as final.
How are defect density and classification results generated?+
The calibrated Atlas workflows compare measured spectral features with reference data and simulation-backed signatures. The app exposes the workflow output so your team can inspect the assumptions and supporting views.
What if the parser or analysis looks wrong?+
Keep the dataset, note the issue, and contact support from the app Resources menu. Parser fixes and custom parser Blocks are often the right answer for unusual instrument exports.

Projects, security, and support

Operational questions for teams using Matter42 in day-to-day work.

How should I organize work?+
Use projects for a research program, customer engagement, wafer run, or experiment series. Within a project, you can keep related files, characterizations, chats, and analysis outputs together.
Is my uploaded data public?+
No. Uploaded datasets are associated with your Matter42 account and selected project. If your organization has specific security, retention, or compliance requirements, contact the Matter42 team before uploading sensitive data.
Can Matter42 run without sending data outside our network?+
Yes. Matter42 can run in your own cloud account, on your own servers, or fully air-gapped on a single laptop or workstation with no network connection. The analysis tools are the same in every deployment, and we fit the setup to your network and security review. See Security and deployment.The air-gapped deployment is a separate product and is not part of the self-serve plans. Contact us to set it up.
Can I run Blocks built in the cloud on an offline machine?+
Yes. Build and refine a Block in Matter42 Cloud or on your private deployment, where the most capable AI assistant is available, then export it and run it on a fully air-gapped machine. The Block runs the same way offline, with no language model or network connection needed. See how Block export works.
Where can I find documentation?+
Start with the Matter42 documentation, which covers core concepts, app workflows, and the Python SDK.
How do I get help from the Matter42 team?+
Signed-in users can use Contact support from the app Resources menu. New customers can also reach out through the website contact form.

See materials intelligence on your data

Bring a Raman map, a PL scan, or a process question. We’ll show how Atlas analyzes it and how it fits your workflow.

Read the docs
Matter42

A world model for your materials: know what you made and decide what to make next, with the evidence attached.

Platform

  • Atlas Metrology
  • Atlas Physics AI
  • Literature

Software

  • Raman analysis
  • PL analysis
  • XPS analysis
  • XRD analysis
  • AFM analysis

Company

  • Vision
  • Team
  • Careers
  • Blog

Resources

  • Documentation
  • Python SDK
  • Security and deployment
  • FAQ

Legal

  • Privacy Policy
  • Terms and Conditions

Social

  • LinkedIn

Copyright © 2026 Matter42. All rights reserved.

Matter42
  • Vision
Sign in

Matter42 Atlas

  • Atlas Metrology
  • Atlas Physics AI

Resources

  • Security
  • FAQ
  • Documentation
  • Python SDK

Company

  • Team
  • Careers
  • Blog
Vision
Sign in
FAQ

Frequently asked questions

Answers for customers and platform users getting started with projects, uploads, analysis Blocks, literature workflows, and support.

Read the documentation
  • Getting started
  • Data and analysis
  • Reliability and interpretation
  • Projects, security, and support

Getting started

The basics for new customers and research teams evaluating Matter42.

What is Matter42 for?+
Matter42 helps materials teams organize projects, upload characterization data, run calibrated analysis workflows, compare literature, and use AI agents to move from raw measurements to interpretable results.
Who uses Matter42 Atlas?+
The platform is built for materials scientists, process engineers, device teams, and research groups working with thin films, 2D semiconductors, Raman, PL, XRD, microscopy-adjacent workflows, and defect analysis.
Do I need to write code to use Matter42?+
No. Core workflows run through the web app: upload files, inspect parsed data, run analysis Blocks, and review outputs. Python and custom Blocks are available when your team wants deeper automation or reusable internal workflows.
Where should I start after signing in?+
Create or open a project, upload your first characterization file, then review the generated maps, spectra, and parser summary before running heavier analysis Blocks.

Data and analysis

How uploads, parsers, and built-in scientific workflows behave.

What file types can I upload?+
Matter42 supports Raman and PL maps, single spectra, CSV/TSV tables, LabSpec text exports, TIFF hyperspectral stacks, calibrated AFM TIFF/CSV surface exports, XRD patterns, PDFs, markdown, plaintext, and images. When a format is custom, parser Blocks can be adapted for repeat use.
What happens after I upload a file?+
The platform detects the file type, parses it into a dataset, stores the result in your selected project, and prepares visual views such as spatial maps, spectra, tables, parser notes, or document records depending on the input.
Which analyses are available today?+
Atlas Metrology workflows include defect clustering, Raman-based defect density estimation, defect type classification, PL defect activity scoring, region segmentation, XRD, AFM, and XPS analysis, and literature search. Atlas Physics AI modeling (atomistic and process) is coming soon as plan add-ons; for a specific material or reactor today, contact us.
Can I analyze paired Raman and PL data from the same sample?+
Yes. Upload both files into the same project and run paired workflows such as defect clustering with PL as the primary dataset and Raman as auxiliary context.
Can I focus analysis on clean material only?+
Yes. Region segmentation can label interior, transition, and damaged areas so follow-up analysis can avoid boundary artifacts, PFIB halos, masks, or damaged regions when appropriate.

Reliability and interpretation

How to think about model outputs, calibration, and review steps.

Are the scientific results automatic or should I review them?+
Matter42 automates the tedious parts, but scientific judgment still matters. Review parser summaries, maps, masks, spectra, and any warnings before treating results as final.
How are defect density and classification results generated?+
The calibrated Atlas workflows compare measured spectral features with reference data and simulation-backed signatures. The app exposes the workflow output so your team can inspect the assumptions and supporting views.
What if the parser or analysis looks wrong?+
Keep the dataset, note the issue, and contact support from the app Resources menu. Parser fixes and custom parser Blocks are often the right answer for unusual instrument exports.

Projects, security, and support

Operational questions for teams using Matter42 in day-to-day work.

How should I organize work?+
Use projects for a research program, customer engagement, wafer run, or experiment series. Within a project, you can keep related files, characterizations, chats, and analysis outputs together.
Is my uploaded data public?+
No. Uploaded datasets are associated with your Matter42 account and selected project. If your organization has specific security, retention, or compliance requirements, contact the Matter42 team before uploading sensitive data.
Can Matter42 run without sending data outside our network?+
Yes. Matter42 can run in your own cloud account, on your own servers, or fully air-gapped on a single laptop or workstation with no network connection. The analysis tools are the same in every deployment, and we fit the setup to your network and security review. See Security and deployment.The air-gapped deployment is a separate product and is not part of the self-serve plans. Contact us to set it up.
Can I run Blocks built in the cloud on an offline machine?+
Yes. Build and refine a Block in Matter42 Cloud or on your private deployment, where the most capable AI assistant is available, then export it and run it on a fully air-gapped machine. The Block runs the same way offline, with no language model or network connection needed. See how Block export works.
Where can I find documentation?+
Start with the Matter42 documentation, which covers core concepts, app workflows, and the Python SDK.
How do I get help from the Matter42 team?+
Signed-in users can use Contact support from the app Resources menu. New customers can also reach out through the website contact form.

See materials intelligence on your data

Bring a Raman map, a PL scan, or a process question. We’ll show how Atlas analyzes it and how it fits your workflow.

Read the docs
Matter42

A world model for your materials: know what you made and decide what to make next, with the evidence attached.

Platform

  • Atlas Metrology
  • Atlas Physics AI
  • Literature

Software

  • Raman analysis
  • PL analysis
  • XPS analysis
  • XRD analysis
  • AFM analysis

Company

  • Vision
  • Team
  • Careers
  • Blog

Resources

  • Documentation
  • Python SDK
  • Security and deployment
  • FAQ

Legal

  • Privacy Policy
  • Terms and Conditions

Social

  • LinkedIn

Copyright © 2026 Matter42. All rights reserved.

Matter42
  • Vision
Sign in

Matter42 Atlas

  • Atlas Metrology
  • Atlas Physics AI

Resources

  • Security
  • FAQ
  • Documentation
  • Python SDK

Company

  • Team
  • Careers
  • Blog
Vision
Sign in
FAQ

Frequently asked questions

Answers for customers and platform users getting started with projects, uploads, analysis Blocks, literature workflows, and support.

Read the documentation
  • Getting started
  • Data and analysis
  • Reliability and interpretation
  • Projects, security, and support

Getting started

The basics for new customers and research teams evaluating Matter42.

What is Matter42 for?+
Matter42 helps materials teams organize projects, upload characterization data, run calibrated analysis workflows, compare literature, and use AI agents to move from raw measurements to interpretable results.
Who uses Matter42 Atlas?+
The platform is built for materials scientists, process engineers, device teams, and research groups working with thin films, 2D semiconductors, Raman, PL, XRD, microscopy-adjacent workflows, and defect analysis.
Do I need to write code to use Matter42?+
No. Core workflows run through the web app: upload files, inspect parsed data, run analysis Blocks, and review outputs. Python and custom Blocks are available when your team wants deeper automation or reusable internal workflows.
Where should I start after signing in?+
Create or open a project, upload your first characterization file, then review the generated maps, spectra, and parser summary before running heavier analysis Blocks.

Data and analysis

How uploads, parsers, and built-in scientific workflows behave.

What file types can I upload?+
Matter42 supports Raman and PL maps, single spectra, CSV/TSV tables, LabSpec text exports, TIFF hyperspectral stacks, calibrated AFM TIFF/CSV surface exports, XRD patterns, PDFs, markdown, plaintext, and images. When a format is custom, parser Blocks can be adapted for repeat use.
What happens after I upload a file?+
The platform detects the file type, parses it into a dataset, stores the result in your selected project, and prepares visual views such as spatial maps, spectra, tables, parser notes, or document records depending on the input.
Which analyses are available today?+
Atlas Metrology workflows include defect clustering, Raman-based defect density estimation, defect type classification, PL defect activity scoring, region segmentation, XRD, AFM, and XPS analysis, and literature search. Atlas Physics AI modeling (atomistic and process) is coming soon as plan add-ons; for a specific material or reactor today, contact us.
Can I analyze paired Raman and PL data from the same sample?+
Yes. Upload both files into the same project and run paired workflows such as defect clustering with PL as the primary dataset and Raman as auxiliary context.
Can I focus analysis on clean material only?+
Yes. Region segmentation can label interior, transition, and damaged areas so follow-up analysis can avoid boundary artifacts, PFIB halos, masks, or damaged regions when appropriate.

Reliability and interpretation

How to think about model outputs, calibration, and review steps.

Are the scientific results automatic or should I review them?+
Matter42 automates the tedious parts, but scientific judgment still matters. Review parser summaries, maps, masks, spectra, and any warnings before treating results as final.
How are defect density and classification results generated?+
The calibrated Atlas workflows compare measured spectral features with reference data and simulation-backed signatures. The app exposes the workflow output so your team can inspect the assumptions and supporting views.
What if the parser or analysis looks wrong?+
Keep the dataset, note the issue, and contact support from the app Resources menu. Parser fixes and custom parser Blocks are often the right answer for unusual instrument exports.

Projects, security, and support

Operational questions for teams using Matter42 in day-to-day work.

How should I organize work?+
Use projects for a research program, customer engagement, wafer run, or experiment series. Within a project, you can keep related files, characterizations, chats, and analysis outputs together.
Is my uploaded data public?+
No. Uploaded datasets are associated with your Matter42 account and selected project. If your organization has specific security, retention, or compliance requirements, contact the Matter42 team before uploading sensitive data.
Can Matter42 run without sending data outside our network?+
Yes. Matter42 can run in your own cloud account, on your own servers, or fully air-gapped on a single laptop or workstation with no network connection. The analysis tools are the same in every deployment, and we fit the setup to your network and security review. See Security and deployment.The air-gapped deployment is a separate product and is not part of the self-serve plans. Contact us to set it up.
Can I run Blocks built in the cloud on an offline machine?+
Yes. Build and refine a Block in Matter42 Cloud or on your private deployment, where the most capable AI assistant is available, then export it and run it on a fully air-gapped machine. The Block runs the same way offline, with no language model or network connection needed. See how Block export works.
Where can I find documentation?+
Start with the Matter42 documentation, which covers core concepts, app workflows, and the Python SDK.
How do I get help from the Matter42 team?+
Signed-in users can use Contact support from the app Resources menu. New customers can also reach out through the website contact form.

See materials intelligence on your data

Bring a Raman map, a PL scan, or a process question. We’ll show how Atlas analyzes it and how it fits your workflow.

Read the docs
Matter42

A world model for your materials: know what you made and decide what to make next, with the evidence attached.

Platform

  • Atlas Metrology
  • Atlas Physics AI
  • Literature

Software

  • Raman analysis
  • PL analysis
  • XPS analysis
  • XRD analysis
  • AFM analysis

Company

  • Vision
  • Team
  • Careers
  • Blog

Resources

  • Documentation
  • Python SDK
  • Security and deployment
  • FAQ

Legal

  • Privacy Policy
  • Terms and Conditions

Social

  • LinkedIn

Copyright © 2026 Matter42. All rights reserved.